APD results for job APD000015 (your_protein)

[Click on APD000015_results.tar.bz2 to download the tarball file including all results listed on this page]
This page will be removed after one month to save computer space, thus please download your results to save locally.

  Native Information

         Summary of the native structure

Number of residues : 193
Number of residue pairs with separation ≥ 12 : 16471
Number of residue pairs with separation ≥ 12 and distance ≤ 8Å : 273
Number of residue pairs with separation ≥ 12 and distance ≤ 20Å : 5962

Download your input PDB file
Native structure visualized by 3Dmol

   Distance Visualization
Native distance map    Predicted distance map    Error distance map   

   Distance Evaluation Results
Prediction-oriented Metrics Value Native-oriented Metrics Value Full-list Metrics Value
Distance precision 0.893 Macro fuzzy f1 0.685 Macro fuzzy f1 0.702
Fuzzy certainty 0.634 Distogram LDDT 0.559 Macro fuzzy precision 0.725
Relative error 0.084 Distance precision 0.717 Macro fuzzy certainty 0.588
Macro fuzzy precision 0.761 Macro fuzzy recall 0.653 Macro fuzzy recall 0.683
Pearson's correlation coefficient 0.928 Macro fuzzy precision 0.729 Download full-list results
Contact precision 0.891 Fuzzy certainty 0.515
Absolute error 0.937 Download native-oriented results
Macro fuzzy f1 0.551
Macro fuzzy recall 0.486
Download prediction-oriented results


  • Z Du, Z Peng, J Yang, Toward the assessment of predicted inter-residue distance, Bioinformatics, 38: 962-969 (2022).