Software developed
Protein structure prediction
  • Fast and accurate de novo protein structure prediction by Rosetta with deep learning-based restraints:
    trRosetta
  • Deep learning-based inter-residue contact and distance prediction:
    MapPred
  • Improved threading with contacts predicted by deep learning:
    CATHER
  • Protein fold classification:
    TA-fold
    • Protein structure alignment
  • Multiple protein structure alignment and structure database search:
    mTM-align
    • Protein-ligand binding site prediction
  • An improved version of COACH for protein-ligand binding site prediction:
    COACH-D
  • Protein-DNA/RNA binding site predicion:
    NucBind
  • Coenzyme A (CoA)-binding site prediciton:
    CoABind
  • Peptide-binding site prediciton:
    PepBind
    • RNA structure prediciton
  • RNA inter-nucleotide contact prediction:
    RNAcontact
  • RNA solvent accessibility prediction:
    RNAsol